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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … Tips for High Molecular Weight DNA extraction: …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile … methods are bringing this mobilome into light, and opening up new options for engineering these microbes in the future. … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine … water samples when The Blob started. The samples were taken up and down the water column along the Line P transect, a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … plants interact with their microbiomes. In addition, his group conducts comparative genomic research to understand the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… farmers around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted … for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of achieving a predictive understanding … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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Partners
… The JGI leverages its existing partnerships and develops others … Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with … Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data …
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes … Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The … both haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted …
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