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Ben Bowen
State University, Bioengineering & Metabolic Biology … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for Exceptional Achievement … Rubel, O., Prabhat, Mahoney, M., & Bowen, B. (2015). Identifying important ions and positions in mass spectrometry …
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A Community Resource for Secondary Metabolite Researchers
… expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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Tracing the Evolution of Shiitake Mushrooms
… from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … Lentinula genus diverged roughly 28 million years ago, when the largest mammal ever, Paraceratherium, … enzymes, oxidoreductases, and cytochrome P450s. This includes the species L. raphanica, which has been …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria that act … production. … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  https://doi.org/10.46936/10.25585/60007554 ) conducted by the U.S. Department …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry weight in … and filtering water. Peat formed there over thousands of years sequesters more carbon than all other vegetation types … peatlands in the face of a warming climate. Identifying these sex chromosomes and their role in sphagnum’s …
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Making a Lichen Together
… that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a …
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An Automated Tool for Assessing Virus Data Quality
… based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … fragments. Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Baldrian’s team was investigating. So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) … referencing the database, Baldrian’s team was able to identify enzymes in the soil and who made them. Based on data … Integrating Collaborations for User Science (FICUS; #49499) program and used resources at the DOE Joint Genome …
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Daniel Udwary
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