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Massie S. Ballon
JGI’s strategic vision, the Institute’s staff and user community. … LBNL Biosciences Area Organizational …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels … . … Morel Mushrooms on MycoCosm Data Portal …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … No. DE-AC02-05CH11231. … P. psychrophila on PhycoCosm … Datasets …
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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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Benjamin Cole
… as an R package … Education … Selected Publications … Software …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … environment.  During the tours through four national user facilities located at Berkeley Lab, including the JGI, …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fungal Friends or Foes in Plant Roots
… office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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2023 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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