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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter … this approach would also allow researchers to learn more about what is and is not modifiable in crops, which can help …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … look like a year after a fire. It also opens questions about what the soil microbiome looks like over longer times …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar type of search in microbial and …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… they need to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal … new views of these relationships.  Recently , researchers used population genomics to find that while archaeal … cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as … summer projects. Each intern also mentioned what they loved about their internship. Efosa Omorogieva : “The entire …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative … the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming … (B2 TRF) biome at the University of Arizona to learn more about climate change feedbacks including drought and …
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JGIota: Looking Back at Sequencing for Soybeans
… able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey (University of …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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I-Min (Amy) Chen
… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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The Case for Conservation
… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references are now … HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the fire moss …
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