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Jinghua Jenny Huang
… on the display and visualization of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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Early evolution of the LIM homeobox gene family
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … of endophyte  M. elongata and poplar, a team led by Hui-Ling (Sunny) Liao of the University of Florida collected … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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Petra Byl
… researcher who cultivates marine algae infected by giant viruses from subtropical, oligotrophic ocean gyres. She uses genomic and transcriptomic sequencing along with laboratory …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … undeniable power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … for 35 species representing all major evolutionary lineages in the land plant tree of life. Ultimately, the …
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University of California, Merced Internship Program
… graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to include … Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and …
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Neha Varghese
… software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science … projects through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes … equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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JGI Accepts 17 Proposals for Community Science Program
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of 50 letters of intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable resources for biofuels …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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