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Dan Rokhsar
… Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity … developmental biology. In addition to this evolutionary focus, his work on plant genomics is targeted towards the …
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JGI & KBase at PAG XXVII
… by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, … with archaea having around 15, eubacteria around 25, and eukaryotes having slightly larger numbers due to their …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in … Research (BER) and is a contribution of the Scientific Focus Area “Phenotypic response of the soil microbiome to …
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Massie S. Ballon
… as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. Ballon is a … to see the coverage of JGI-enabled science highlighting user research, newly accepted proposals, and outreach … The Manager of Communications & Outreach is responsible for sustaining the integrity of the JGI brand through an …
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Webinar: SIP technologies at EMSL and JGI
… and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL … the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for enrichment? A:  The JGI uses … C13 and sort of the isotope of proteomics, what about doing this with metabolites at EMSL? A:  The answer to …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She … Nuevo is, historically, a fishing town and we know little about its coastal microbial ecology. We also know little …
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Waiting to Respire
… of the significance of endosymbiosis in evolution of eukaryotes, and Saganbacteria were named for Carl Sagan, … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to … the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in … that’s an example of a yucca species. And the cool thing about yuccas is that there are closely related species that …
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Ian Blaby
… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … by the DOE Biological and Environmental Research (BER) program to enable scientific discovery in support of the DOE … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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New Research Sheds Light on Diversity in the Deep Sea
… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too … be applied to biotechnology and medicine. A more robust understanding of these microbial communities could lead … separate, seawater seeps through cracks in the Earth’s crust and reacts with very hot rocks below, becoming an …
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