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JGI announces second round of 2023 New Investigator awardees
… Rober, Neal Scott, Chikae Tatsumi, Vojtech Tlaskal, Fernando Torralbo, Luis Felipe Valdez-Nuñez  The JGI is eager …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … root, leaf and rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the … develop the overall experimental design, sequenced the RNA from nearly 400 root and leaf samples and helped analyze …
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Ian Blaby
… Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and … starchless mutant. The Plant Cell . 25: 11, 4305-4323. 2013 Blaby et. al., Experimental evolution of a facultative …
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First Monoploid Reference Sequence of Sugarcane
… breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical … sequence. For the highly polyploid sugarcane, an international team of researchers has successfully assembled a … focused on the gene rich part of the genome by harnessing information from a sequenced related species – sorghum. The …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… genes are active. Researchers also identified transfer RNA genes with unusual structures that could be useful for … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and they agreed, providing three articles for the journal with Du Toit as their editor. The partnership has … our role as a Department of Energy Office of Science User Facility. As such, JGI is involved in a broad variety …
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a … imaging for in situ kinetic histochemistry. Sci Rep. 2013;3: 1656. …
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Back in the Lab: the 2023 Summer Intern Experience
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Fungus Fuels Tree Growth
… (Sunny) Liao of the University of Florida collected forest samples of poplar and soil from Washington and Oregon. The … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program in … by the DOE Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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2024 Progress Report
… Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … in April 2024 — through serving an increased number of users with a record output of products, making data easier … A record number of primary users — 2,475 — had active proposals with us, along with …
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Waiting to Respire
… (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in … single amplified genomes of Margulisbacteria from marine samples. The research teams opted to collaborate on a single …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … at the  2022 JGI Annual Meeting . In an herbivore’s poop sample, there’s a whole heap of microbes, each potentially … powerful biomass processing. “So if you peer inside a poop sample, or a rumen sample, you’re going to find beautiful …
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