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Honey Bee Gut Microbiota Divvy Up Dinner
… yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees rely on their gut microbiota … Academy of Sciences . The team focused on the dominant bacterial clades shared between honey bee and bumblebee gut … in the bee’s ileum, a structure analogous to the human small intestine; and  Bifidobacterium,  which dwells …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … target specific microbes or change the behavior of this bacteria — most likely there is a virus that is already …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The … National Laboratory (Berkeley Lab), embarked on a pilot project with biology students from Boca Raton Community High … was involved, I was not sure we could even complete a full project. Every other group I contacted was happy to offer …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… biosamples in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we …
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Fishing for Novel Cellulose Degraders
… cell sorting to sort cells into several small pools, followed by whole genome amplification and … shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  Candidatus …
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Igor Grigoriev
… the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … Igor …
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JGI Hosts GPU Hackathon in May
… – our data and compute challenges aren’t getting any smaller and we need to keep pace with changes in …
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Tracking the Origins of Methane-Producing Microbes
… to these samples by sorting the microbes into small pools of cells that were then sequenced separately. …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … fungi, researchers identified novel interactions between bacteria and the fungi. The Impact Stable isotope probing is … identified a wide variety of microbes, including both bacteria and archaea, actively engaging with the fungi — …
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Simon Roux
… prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. … viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The … et al., 2019. Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature …
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Scientific Advisory Committee
… from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. The top image on the left shows how, from a single bacterial cell (seen here in a glass capillary), researchers …
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