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Jeremy Schmutz
… of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to … to continuing to develop strategies for plant genome sequencing, he manages the de novo plant assembly and the …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Honey Bee Gut Microbiota Divvy Up Dinner
… is a division of labor by these bacterial groups. But why the strain variability? The authors think the reason may … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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Webinar: PhycoCosm Tutorial
… analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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The Case for Conservation
… The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … to fully sequence the fire moss genomes ran the gamut of sequencing technologies, from making a bacterial artificial …
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Styling for Safety: PPE, It’s the JGI Way
… and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Learning to Look
… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply getting much …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Facility located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has … different Swiss Army knives — explaining a bit more about why and how nitrogen metabolism is so robust and varied.  …
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