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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. … an assistant professor at the University of Delaware — is  building on this work to explore an enzymatic ‘toolbox’ of …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … developed an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, … class of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … genome for  M. sinensis,  and the associated genomic tools, allows  Miscanthus to both inform and benefit from … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done … fungi that feed on decaying plant matter (saprotrophs) have transitioned to the symbiotic lifestyle. The Impact The … are available on the JGI fungal portal  MycoCosm . The work builds upon several papers and workshops, starting with …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access high-quality genomic information using minute …
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Len Pennacchio
… has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He … areas. Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, … in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which smells terrible … the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural products. The team then …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the …
Learn more
JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest … Roth of the University of California, Berkeley aims to redesign and engineer algae by identifying the algal … lignocellulosic and other biorefinery products. The work builds off a previous international collaboration that …
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An Integrated Dataset to Understand Ecosystem Interaction
… poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using … the resilience of bioenergy feedstock crops. The work builds off a longstanding partnership between the JGI and …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can … amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … University of Texas at Austin, HudsonAlpha, and the JGI. Building off this work, researchers at three DOE Bioenergy …
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