Results

An Integrated Dataset to Understand Ecosystem Interaction
… wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & … talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … public repository of BGC sequences that come pre-annotated using multiple commonly used sequence analysis tools is a …
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Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … that these genome copies that are spread throughout the whole cell are actually contained within a structure that … in three dimensions and at relatively high magnification. Using various microscopy techniques, such as hard x-ray …
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Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments
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Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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2024 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … more than doubled the number of known protein families by using AI clustering algorithms to identify billions of …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… developed between the two institutions to help train the next generation workforce. Co-advised by JGI Microbial Program …
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