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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to … has already demonstrated CRAGE as a versatile engineering system that allows scientists to conduct genome-wide screens … For more on this feat, see this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, which particularly helps … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for … genome infrastructure with a reasonably accessible system,” said Schmutz. “Building the pan-genome and …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume … Science User Facility located at Lawrence Berkeley National Laboratory and used to identify the microbes involved in … JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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JGI@25: Using Team Science to Build Communities Around Data
… help solve energy and environmental challenges. The 1KFG project represents affiliations at over 180 organizations in … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … way to connect genes and infer changes in gene function across the phylogeny — and link these into our DOE crop …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    … researchers the ability to chart regulatory networks across evolutionary time and diverse plant lineages. Aligning … for researchers and scientists to build upon , allowing the platform to enable discoveries in plant biology and beyond …
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Defining a Pan-Genome for Antarctic Archaea
… a team led by University of New South Wales (UNSW)-Sydney professor Rick Cavicchioli compared two strains of … on understanding the genomic variation in haloarchaea across East Antarctica. The implications of the current study … JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a …
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Marine Microbe Contains Multitudes
… surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science … the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact many ecological … or not you planned it, viruses are most likely in your system and in your data, and they’re probably influencing … Camargo developed a new pipeline for identifying viruses across many thousands of genomes and metagenomes, called …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to … data analysis. It is a free, open source analytics platform provided to the research community by DOE. … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable … can harvest the sample, then we can put it into the laser system 7. Q: Can radioactive isotopes be used at EMSL? A: …
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Team Science Reveals Important Protein in Poplar
… crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant … applications. Poplars grow quickly and the plants can be crossed to produce traits that make them more appealing …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… The practices that support agriculture – such as efficiently … Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), to help drive discoveries that …
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