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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to … track record of developing cutting-edge tools for viral genomics. Notable examples include CheckV , which assesses …
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Four Researchers Join JGI User Executive Committee
… Research (BER) missions. The JGI provides advanced genomic capabilities, large-scale AI-ready data and … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, … based on his own accepted proposals. He sees his priorities within the UEC as providing advice on policies and …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … Roux is also one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will take …
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JGI@25: Roots of a Mutualist Relationship
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You Can Move, But You Can’t Hide
… Over time, MGEs can help microbes gain a competitive edge within an ecosystem. They influence the composition of the … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, … DE-AC02-05CH11231. This work also received support from the Genomic Science Program in the U.S. Department of Energy, …
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Open Frameworks Training the Next Generation of Scientists
… higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological Curriculum for … 316 students in fungal biology, bioinformatics, and genomics.  The Impact For decades, the Department of Energy … for students developing skills in fungal biology and genomics. Fungi can be better understood through reference …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… sort of homogeneous medium. In reality, it’s not — there is variation of nutrients, temperatures, and other … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have used … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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JGI@25: From Life at the Extremes to Editing Genomes
… led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… relationships than other algae, Auxenochlorella ’s reduced genomic complexity can accelerate the design-build-test …
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Learning to Look
… to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … learned how an inovirus’ strategy of integrating itself within a host can lead to beneficial or antagonistic …
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Sequencing Submission Requirements for DNA Synthesis
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