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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer … This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … several points in time to assess nutrient concentration and cell death. Immediately upon transfer, the experimental …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … regulation is critical to ensuring genes vital for growth and survival across various environments are … sets associated with functions like stress responses and cellular differentiation. The tough part is identifying the …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced … on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with … language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … the goal is to create an entirely human-generated yeast genome. …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including …
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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