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Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora
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Project Management Office
… Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …
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Pinning Down a Piece of Photosynthesis
… a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic … chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a variety of soils and has a … HAL2 and FIL2 genomes on Phytozome Data portal …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more … user-available API’s offer a space to not just store data, but for the community to discuss those data and make … working with actinobacteria and serves as a freely accessible resource that taps into a global network of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … of work; as sequencing technologies advanced, assembly and annotation of the genome sequence improved in parallel. The … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … genome for each of the fungal families. Researchers had access to over 100  Dothideomycetes genomes, just enough of …
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JGI@25: The Little Alga That Could
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … algal genomes using Chlamy as a reference for functional annotation, including Chromochloris zofingiensis , which has …
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SPRUCE-ing Up Science
… is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … from northern California and one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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2025 NeLLi Symposium
… Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial … cycles and beyond, as well as microbial symbioses. We aim to foster discussions centered on how to capture, define, …
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Forming Scientific Connections and Building Community
… months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … on their summer projects. Watch the short video here to see what they had to say about their experiences and what … Zhong Wang Project: “ Improving biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … on JGI policies and practices that affect users and their access to technical capabilities JGI offers, as well as …
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