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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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David Goodstein
… for the JGI's direct collaborators and the wider plant science community. Dr. Goodstein’s group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, … 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can … recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed significant signs of recovery …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, … genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present current and … Program and how you can use the KBase system to accelerate your plant genomics research. …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … Researchers have the opportunity to combine the power of genomics and molecular characterization offered at multiple …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … of California (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene …
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