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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as well as our …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the … and evolutionarily conserved genes that could be potential future targets for functional genomic studies. We also …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … have worked to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international collaboration, with some artistic endeavors along the way. Eventually, the …
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Building Sphagnum Genomic Resources
… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … These resources would provide the research community with the ability to address questions such as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its …
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Microbial Genomics & Metagenomics (MGM) Workshop
… highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for … sequence data and enables the user to analyze these data with existing bioinformatic methods to bridge the gap from …
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Ben Bowen
… chemoinformatics, and bioinformatics facilitates impactful scientific discoveries, supporting the DOE’s Biological and … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … Google Scholar. … Education … Awards and Honors … Selected Publications …
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Tanja Woyke
School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed research … our partner institutions, funding agencies and the broader scientific community. … MS in Biology, Eberhard Karls … User Programs … Education … Awards and Service … Selected Publications …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Creating an Energy Market for Miscanthus
… addition to your garden and a potential fuel for the future. But, to be competitive in the market, both energy …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens …
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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … work also used resources of the  National Energy Research Scientific Computing Center , another DOE Office of Science …
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