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… Ruoxi Zhao and mentor Margot Bezrutczyk Eric Wu and mentor Atif Shahab Edward Lu and mentor Miguel Romero Sean Saki and … to work with a scientist and, uh, how to, um, make a scientific research poster. And I was able to present at the, um, …

… before work on your proposal may begin.  You will be notified by your project manager in the initial correspondence … following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   …

… of these plant genome sequences also led researchers to identify a gene related to seed dispersal in wild populations … to be collected.  Association mapping led the team to identify a gene called Less Shattering 1 (SvLes1); gene editing … by turning it off. “It’s a new shattering gene variant identified in a natural population. Not very many of these …

… at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The … described in  Nature Biotechnology  called geNomad identifies and classifies MGEs based upon their gene content and … that combines and builds on two standard techniques for identifying viruses and plasmids. Until now, most other tools …

… U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment and … Science Fund (FWF, P23117-B17, P25111-B22, P26392-B20, and I1628-B22), the JGI (CSP 605), the German Research Foundation … Grant No 660280), and the VILLUM FONDEN (research grant 15510). …

… fragments from the ecosystems. Selecting a protein identified from their studied system results in seeing their … activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … data (the 136 tetranucleotide frequencies for each of the 12,063 metagenomes) and reduce it into two axes (LDA …

… that support its user community. The breadth of scientific expertise of both the recently elected and continuing … JGI improve its interactions with the broader user and scientific community and consider new initiatives in areas such …

… Approximately 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They … User Facility, is supported under Contract No. DE-AC02-05CH11231. …

… of river health diagnostic systems to monitor for and identify land use or water quality changes. Summary Rivers are … the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a … (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National Science Foundation …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and …

… foster discussions centered on how to capture, define, quantify, and functionally characterize microbial diversity. The … to discover novel lineages of life and move from the identification of microbial novelty to assigning metabolic and …