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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for … the JGI, responsible for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. …
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Matthew Kellom
… between microbial life and environment, and using metagenomics to study these complex natural systems. … places that are considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and …
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … Standing at the intersection between the rapid development of genome and computational technologies, in the coming …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear from CSU San Marcos Professor Matt Escobar and UC Davis Associate Professor …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, …
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2025 NeLLi Symposium
Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the … Natarajan Google Olga Zhaxybayeva Dartmouth University … Metagenomic and single-cell sequence data have provided a …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, … Giant virus diversity and host interactions through global metagenomics. Nature 578, 432–436. … DOE BER Early Career …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … within their environments. Summary The traditional shotgun metagenomics approach to learning more about environmental …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … hone science presentation skills, and participate in professional development enrichment activities. For some … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes contribution of scholarship in the field of microbiology and is awarded … techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … “Given the great expertise in microbial genomics and metagenomics of the microbiology-focused groups at the Joint …
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