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DOE JGI Metagenome Workflow
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three … design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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Building a custom high-throughput platform at the Joint Genome Institute for DNA construct design and assembly-present and future challenges.
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Viruses Reprogram Cells into Different Virocells
… be a duck. But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University and … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley Lab Attendee – $250 Student – $200 Regular Rates (begin September 19, 2026) … every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” community to foster …
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Fungus Fuels Tree Growth
… feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as a … larger by dry weight than without PM193  . By contrast, using a different endophytic fungus,  Ilyonectria europaea , … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Cultivating Symbiotic Antarctic Microbes
… and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental …
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User Executive Committee Charter
… The JGI User Executive Committee (UEC) represents the JGI user … providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … — small enough that thousands can be sequenced and compared using modern technologies. The JGI recognized this …
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Opening doors to physical sample tracking and attribution in Earth and environmental sciences
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JGI Workshops at 33rd Fungal Genetics Conference
… 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of Pathogenicity" Workshop Steven Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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