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Metatranscriptomes of California grassland soil microbial communities in response to rewetting.
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Microbiome composition modulates secondary metabolism in a multispecies bacterial community
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A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate
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Marine Microbe Contains Multitudes
… ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In … cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … in activity as well; at any given time, many species in a community may be in ‘low power mode’, where they do very … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Institute. The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference …
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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … For example, they showed that the composition of the community was similar across sequencing approaches, that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan … approaches in support of meeting DOE mission critical programmatic goals. … Joubert et al., “Attacking the Opioid …
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Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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