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CSP New Investigator Call
… is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will … mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … the organism’s ecology, mostly based on literature and user community inputs. We also have the potential to create new … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … the metabolomic analysis capability available through the  Community Science Program (CSP) . This includes mass … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… collaboration is available for licensing. The Science In  Nature Communications , researchers describe a … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing … Materials strategic initiative aims to enable the JGI user community to participate in the development and …
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Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater
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Genome-reconstruction for eukaryotes from complex natural microbial communities
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Plant–microbiome interactions: from community assembly to plant health
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Plant Microbial Interactions Group
… 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: … (Tokyo University) Dongfong Wang (Spelman University, VFP Program) Emerald Nash (UC Merced Intern) Tyrome Sweet (UC …
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment …
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