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For the first time in several years, the DOE Joint Genome … together on predicting the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re using an attentive deep learning model called Tabnet in order to perform regression on the …

… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …

… of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …

DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … in studies of complex biological and environmental systems. We optimize our service to the community through …

Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … environment – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … natural products. And natural products is an older term for the special, natural chemical compounds that you find in …

… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the … the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes …

… across southern Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  … JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , who heads the  …

PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … company LanzaTech to develop a “cell-free” gene expression system. Developed through the JGI DNA synthesis Community … and use the data we generated to train machine learning models now publicly available for the research community,” …

… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …