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Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … The field experiment is led by a consortium involving researchers from the University of California (UC), …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire … also tried to hone in on the function of the genes via 3D modeling, and comparing structures of the unknown to those …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering … traits. Given the importance of polyploidy in plants, researchers have sought to learn the origins, evolution and … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this …   These experiments focused on two species at once: the model legume species  Medicago truncatula and the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … their expertise in developing and managing public viral genomics resources such as analytical tools and data …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… the genomes of two varieties of a close relative and model species. The following year saw the beginnings of … using switchgrass samples from these gardens, a team led by researchers at the University of Texas at Austin produced a … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can thrive in changing conditions. A … ability to adapt to stress and rapid environmental changes. Researchers were able to identify specific genes that allow …
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JGI Launches Latest Strategic Plan
Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion … has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … funders at the DOE Office of Biological and Environmental Research (BER), among others. New areas of emphasis, for …
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Neha Varghese
… bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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