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Polar Phytoplankton Need Zinc to Cope with the Cold
… vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … contains expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture experiments … Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the … fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … researcher who serves as their mentor. By contributing to projects that will help them build skills and tools, they …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … DOE Office of Science National User Facilities in a single project. … were performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative and used resources …
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JGI at the AGU Fall Meeting
… Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … The JGI sequenced half of the 4,500 BACs sequenced for this project that were colinear to the gene-rich part of sorghum … This work was supported by the International Consortium for Sugarcane Biotechnology, as well as the …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … partnership had become a “model” of sorts at the Lab. “This project represents part of our long term efforts to …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … (transcriptomes) from their soil samples. This gene expression dataset was particularly important for … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  c … human and ecosystem health. But bacteria often fail to express their BGC molecules in the lab. By engineering … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and …
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