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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Integrating Experimentation with Data
… back for more details and registration information. Sign up for our newsletter , the JGI Primer, to stay informed … … and informatic tools at no cost. The JGI and EMSL are supported by the DOE's Biological and Environmental Research … … About the Organizers … Stefani Ferreira , administrative support  …
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Mindfully Moving JGI
Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a … between JGI’s Safety office, the Safety & Wellness (SWELL) Team, and  Sustainable Berkeley Lab . “While we’re getting … Christine Naca, JGI’s SWELL Lead and part of the IGB Move Team. “And also, so that the reusable stuff that’s very …
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JGI on the 2020 Highly Cited Researchers List
… platform. Nikos Kyrpides and  Simon Roux are part of a team that  developed CheckV , an automated tool to help … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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Game On: High School Students Drive Everglades Metagenomics Study
June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot … with one of his favorite answers being, “It would take a team of Ph.D.’s over a year to do a project at this … an undiscovered gene that was sequenced in the project to breakdown methane and noted how awesome it would be to …
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Ancient hybridizations among the ancestral genomes of bread wheat
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Genome interplay in the grain transcriptome of hexaploid bread wheat
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DOE Metrics
Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† Actual … [Download PDF]   FY 2014 Overall Sequencing Progress, Updated Quarterly Quarter Total Bases (Billions) Operating … available hours.   FY 2013 Overall Sequencing Progress, Updated Quarterly Quarter Total Bases (Billions) Operating …
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JGI on the 2021 Highly Cited Researchers List
… was part of a long-term multi-institutional research team that combined field data with a reference switchgrass … hosted two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. Additionally, working with Michelle O’Malley’s team at the University of California, Santa Barbara, he and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and … that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, … JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus mining. After a couple of …
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The Expanding Universe of Methane Metabolisms in Archaea
… diversity can emerge from tinkering of a common set of enzymes.” Gribaldo will be speaking on “Exploration of … Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic trees have relied on … sediments and based on metabolic reconstructions, the team has two main hypotheses: the novel korarchaeon could …
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