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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of … In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries … of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community of postdoctoral and …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence … of the JGI is to provide the global research community with access to the most advanced integrative genome science …
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Ben Bowen
… chemoinformatics, and bioinformatics facilitates impactful scientific discoveries, supporting the DOE’s Biological and … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … spectrometry imaging for in situ kinetic histochemistry. Scientific reports, 3(1), 1656. Rübel, O., Greiner, A., …
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Len Pennacchio
… areas. Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … Berkeley Laboratory Director’s Award for Exceptional Scientific Achievement 2017-  Adjunct Professor UC-Berkeley … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working with our facility. This includes help with: preparing a …
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Pinning Down a Piece of Photosynthesis
… pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Fungus Fuels Tree Growth
… root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … . Now, CRAGE is being applied to other synthetic biology problems. For example, a group of JGI users led by Steven …
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Extracting the Secrets of Secondary Metabolites
… payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers with a powerful addition to … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary … CRISPR into other bacteria, thereby enhancing the scientific community’s understanding of how secondary …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … April 2024 — through serving an increased number of users with a record output of products, making data easier to … 11% of the five-year milestones. … Highlights arising from scientific collaborations with our users over the last year …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… of Texas at Austin professor, “but we really first heard about the JGI synthesis grant during a presentation that … Zerbe of the University of California, Davis. “The work with JGI was one of the first things we actually started … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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