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Tina Clarke
… her BA degree in Psychology from Sonoma State University. Early on, Ms. Clarke knew the importance of understanding human and group behaviors as her role in HR … and trust. Ms. Clarke is very enthusiastic to be a part of the Berkeley Lab’s first Conflict Resolution Services …
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Mike Sneddon
… Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab … in his career, he was a core software engineer on the early KBase team at Lawrence Berkeley National Laboratory. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … with Dr. Tomas Tyml and Dr. Frederik Schulz with the New Lineages of Life Group at JGI. And we’ve been working on … and it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about …
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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … of the Deepwater Horizon oil rig explosion that dumped nearly five million barrels of light crude oil spilling into … different fractions of the oil. Hazen described the early efforts in his keynote talk at JGI’s 2011 Annual …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus … and evolution of this important gene family across eucalypt lineages. Since terpenes serve as feedstocks for biofuel …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … five universally conserved, protein-coding marker genes on nearly 2 million genomes, including isolates, … varying quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … “Klosneuviruses.” Previously known members of the viral lineages in the NCLDV group infect mainly protists and … data, two-thirds of which could be assigned to viral lineages, and predominantly in samples from marine (55%) and …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part of an …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the … His contribution to the paper also aligns with his DOE  Early Career Research Program (ECRP) award, which is also …
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