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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… of California, Berkeley and Berkeley Lab, who discussed the exciting progress in gene editing made possible by … lot of unlocked questions to answer,” she said. Learn more about Doudna and her latest work at the  Innovative Genomics … can really change large-scale processes.” To learn more about Assaf Vardi’s work, find the  Vardi Lab website , and …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … foundational genetic information that crop breeders can use to improve sugarcane varieties and advance a sustainable bioeconomy. Researchers and farmers could improve …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … The microorganisms found there utilize a unique array of chemicals not typically found in oceans or soils.  A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  …
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Kjiersten Fagnan
… Research Division. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes …
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Gotta Catch 'Em Gall
… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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Jasmyn Pangilinan
… provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she works to develop and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … circular capture areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this …
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A Sorghum Pangenome Opens More Doors to Discovery
… development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for … how we think of things that we thought we knew everything about,” said Lovell.  In future work, a pangenome offers … — including understanding of traits we know little about.  Researchers from Colorado State University, DIRAD, …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative … the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming … (B2 TRF) biome at the University of Arizona to learn more about climate change feedbacks including drought and …
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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before …
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