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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and …
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The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
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JGI on the 2020 Highly Cited Researchers List
… from the JGI are: Kerrie Barry I-Min Chen Igor Grigoriev Jane Grimwood Natalia Ivanova Nikos Kyrpides Dan Rokhsar Simon Roux Asaf Salamov Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of … of a team that  released a reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … JGI on a proposal using this approach through the Emerging Technologies Opportunity Program (ETOP). Following that …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Simon Roux (Cross-field)  Jeremy Schmutz (Cross-field)  Susannah Tringe (Microbiology)  Tanja Woyke (Biology and Biochemistry)  Here’s a selection of studies these busy bees contributed to:  Giant bacteria visible to the … as other year-end science discovery lists.  Updates to the Genomic Encyclopedia of Bacteria and Archaea : Under the …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, Douglas fir and Engelmann spruce–to learn more about conifer needle microbiomes. The survey showed what …
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Crysten Blaby-Haas
… Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the development of a joint user capability between the JGI and Molecular Foundry for … working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… established and emerging scientists from academia, industry, and government organizations for three days of scientific presentation, … center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your …
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Statement on the Use of Genomics Data
… Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as to the  data portals that …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… metabolic engineering and biocatalyst design will target sustainable energy solutions, focusing on lignocellulosic … awardee.  The CSP Annual call is focused on large-scale genomic science projects relevant to the DOE’s Office of … nutrient cycling, and biogeochemistry.  You can learn more about this call, as well as our smaller-scale New …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … vastly outnumber the microbes. Advances in sequencing technologies and computational tools have uncovered a … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …
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