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Webinar: MycoCosm Tutorial
… EcoGroups are built? A: EcoGroups are built based on what is known about the organism’s ecology, mostly based on … JGI portal, IMG:  https://img.jgi.doe.gov 7.  Q: And what about myxomycetes (Amoebozoa), would you consider them … ) A: It is in our development plans 15.  Q: What is the user annotation process (are these functional …
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Building Sphagnum Genomic Resources
… food or fuel applications. The Impact Sphagnum’s impact on global carbon cycling and climate is estimated to be larger … (peat moss) is an unassuming plant, but it thrives in nutrient-poor, acidic and waterlogged environments, … as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its productivity and decomposition …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… their predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact The initial … of gene annotations that provide insights into the nutrients that are being used and cycled in different … across different ecosystems to better understand how nutrients are used and cycled. Additionally, it can show how …
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Nikos Kyrpides
… et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. … Biotechnol . Epub. Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. … Nature Biotechnol . 39(4):499-509 Danko D, et al. 2021. A global metagenomic map of urban microbiomes and …
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Year in Review: JGI’s 2018 Progress Report Available Now
… mobility and to better understand their roles in the global sulfur cycle. Copies are available online – click …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which organisms are active, and which microbes are eating what,  in the environment.  This distinction — between … will help grow and improve high-quality datasets, enabling global insights from modeling, machine learning, and …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Webinar: Introducing the BioSANS capability
… (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, …
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Trent Northen
… Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… non-profit, and industry researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules … analyses? A:  This can be requested through the  JGI/EMSL FICUS user program .  Q:  Is it possible to use these same … think are affecting your results – could it be wind/light/nutrients.. any ideas? A:  At this point, we’re really not …
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A User-Centered Approach to Accessing JGI Data
… He also elaborated on the following topics. Q(uestion): What is the Data Portal’s scope? A(nswer): The JGI Data … that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations do users accessing need …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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