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… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … on an aspect of the  Phenotypic Response of the Soil Microbiome to Environmental Perturbations   under PNNL’s … expected to be expert users on all of the scientific instruments. Instead, members of the scientific staff from both …

… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 … improve the genome’s accuracy, and increase its length by 29.5 Megabasepairs. 2017: Pan-genome analysis of sorghum …

… DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with …

… twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how … many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms …

… to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy … retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a …

… and applying laboratory ecosystems to help transition microbiome science from largely observational to … mechanistic studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of …

… — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … The work conducted by the US Department of Energy Joint Genome Institute ( … ), a DOE Office of Science User Facility, is supported by the Office of Science of the US Department of Energy …

… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … the 1000 Fungal Genomes Project, which aims to provide a reference genome for each of the fungal families. …

… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For … Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome …

… living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … Canal System,” focuses on anthropogenic impacts on wetland microbiome composition and metabolism, work on which she is … in California’s manmade water transport canals. Inspired by Randall Munroe’s xkcd comic “Up Goer Five” and his …

… again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your … of them. A: Watch the video (above) for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data … populated by algal genomes thus defined. We also have some reference plant genomes to help with comparative studies of …