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First Monoploid Reference Sequence of Sugarcane
… Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they … For diploid species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Progress Reports: 2002–2020
… FY11 Progress Report …
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Training the Next Generation of Talent
… Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the Quantitative … weeks at the DOE JGI, Olmstead saw a few familiar faces, one of them belonged to his research adviser Axel Visel. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree … genomes that allowed for mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past billion years, fungi have spread … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Hiroshi Otani
… Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied …
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Katherine Louie
… became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities … platform are a result of Dr. Louie’s establishment of a strong core foundation of robust mass spectrometry workflows …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science … the data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the … emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, software, compute, and …
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Benjamin Cole
… interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants coordinate their gene expression with light …
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Yasuo Yoshikuni
… of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, … strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This program has supported over 250 projects since it …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led … DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed …
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