Results

Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … The team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … K et al . EcoFAB: Advancing microbiome science through standardized fabricated ecosystems. Nature Methods (16), … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Decoding Yellowstone’s Microbial Mats
… exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user …
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