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Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
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Laying the Foundation for a Genomic Rosetta Stone: Creating Information Hubs through the Use of Consensus Identifiers
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Emiley Eloe-Fadrosh
… Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … novel technique to access high-quality genomic information using minute quantities of DNA derived from individual … a way for researchers to study the planet’s microbial diversity, much of which remains unknown and uncultured in …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s … with names — but not doors — and robots handle a bunch of benchwork. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one host …
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The Essential Role of the N-Terminal Domain of the Orange Carotenoid Protein in Cyanobacterial Photoprotection: Importance of a Positive Charge for Phycobilisome Binding
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis … (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library generation and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … Doudna, the CRISPR-Cas9 investigations began as “curiosity driven research.” In the early 2000s, UC Berkeley colleague …
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