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… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national … in areas such as developing pathogen-agnostic detection and prediction strategies for types of as-yet unknown pathogens. …

Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot … [metabolic modeling], but they might be interested in how biochemistry impacts what they work on. The genomics …

… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …

New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … called lignocellulose, are the primary components of hardy cell walls. It’s the cellulose and hemicellulose … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to … this and deal with it is through these antibiotic- or antifungal-producing bacteria that live on the exoskeleton of …

… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi …

JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced … cellular phenotypes and genotypes. Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would …

Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … University of California, Berkeley Postdoctoral training in Biochemistry, University of Washington … Shen et al., … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …

Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the …

… their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has … Wint, UC Merced JGI Mentors: Igor Grigoriev & Asaf Salamov, Fungal Program “Working at the JGI has reinforced my plans …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens …

… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can browse the … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …