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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have … accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … B.S. in Microbiology, Université Blaise Pascal, France M.S. in … Neri et al., 2023. Expansion of the global RNA virome reveals … and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11, …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … how the molecules in tiny microbes can impact whole ecosystems. Part of the reason he’s asking this question is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … This research was supported by the National Science Foundation (NSF) …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI … .    ( Subscribe to Genome Insider on  Apple Podcasts ,  Spotify or wherever you get your podcasts) Microbial …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets …
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JGI Announces 2025 New Investigator Portfolio
… Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … to explore microbial and plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities … with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … developing models for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to … Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … activities. Aside from being a key component of the marine food web base, they also feature in many nutrient …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao … Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation …
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