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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Genomic features of bacterial adaptation to plants
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … their expertise in developing and managing public viral genomics resources such as analytical tools and data repositories to two … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint … species to answer questions about how they break down plant materials, which could be useful for industrial …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker …
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Forming Scientific Connections and Building Community
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … learned so much in terms of scientific approach and as a plant biologist, I have learned so many techniques and … who were able to give me some guidance in my academic journey.” Mentors: Deze Kong & Yasuo Yoshikuni Project: “ …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … to M.O.). Support was also provided by the National Natural Science Foundation of China (31590821, 31561123001, …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … propagated from cuttings represent a diverse collection sourced from half of the United States. As  reported January … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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A vast collection of microbial genes that are toxic to bacteria
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Game On: High School Students Drive Everglades Metagenomics Study
… class at Florida’s Boca Raton Community High School. The course had a defined set of objectives, and started with an … Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …
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