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Computationally Classifying Fungal Lifestyles
… regarding the effects of climate change. Summary A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Machine (SVM)-based prediction of lifestyle based on 6 gene clusters showed a >95 % accuracy in correctly predicting …
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How Maize Makes An Antibiotic Cocktail
… scientists a bigger bang for their buck. The research team reports that transferring just four genes encoding … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the team uncovered were found in multiple, semi-redundant clusters on different maize chromosomes. The collective …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five fungal species to answer questions …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and interactions between forests and the atmosphere. The team learned that some bacterial families carry genes for … Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin Frank’s lab , worked on an aspect of the …
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CSP New Investigator Call
… is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will … Proposers are encouraged to review the JGI’s sample requirements . Samples that are not available …
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Evolution of a Fungal Gene Expression Regulator
… their genomes, but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … in repetitive DNA and transposons in methylated cytosine clusters (MCCs – similar to the MAC clusters for 6mA), …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have … outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds metadata …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Program and is one of the article’s senior authors. The team was also compelled to study these large bacteria in … observe novel, membrane-bound compartments that contain DNA clusters. He dubbed these organelles “pepins,” after the …
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … for them. Their concerted efforts help maximize the JGI’s impact in advancing both user science and the DOE …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … communities change with latitude. An invisible boundary The team set out on a Lewis-and-Clark-like expedition to … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric …
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Toward More Efficient Artificial Photosynthesis
… water, to convert them into energy that is then stored. A team led by researchers at the Max Planck Institute (MPI) … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the Erb lab through the CSP Functional Genomics call, the JGI synthesized library of genes that code for Enoyl-CoA …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor … this work sets up protocols and pipelines that other teams can use around the world. These tools give researchers …
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