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Fungus Fuels Tree Growth
… effort to understand its influence on the plant, a team of scientists studied what happens to the tree’s physical traits and gene expression when … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Tina Clarke
… BioEnergy Institute (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … Lawrence Berkeley National Laboratory, Berkeley, CA/ Sr. Compensation Analyst and Human Resources Partner, June 2017 –  … Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present Berkeley National …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced … My most favorite parts of the internship were the open and collaborative environment, the possibility to reach … Year: 3rd year undergraduate student Mentor: Zhong Wang, Genome Analysis What effect has your summer internship with …
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Ian Blaby
… 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for …
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Team Science Reveals Important Protein in Poplar
… potential for engineering bioenergy crops The Science Scientists at Brookhaven National Laboratory (BNL) led a … Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ) was conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. … so small, it’s possible flagella would be a liability in open water — requiring more energy for the bacteria to orient …
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Mike Sneddon
… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and compute … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have … outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds metadata …
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Fishing for Novel Cellulose Degraders
… by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … bound single microbes to fluorescently labeled cellulose particles that served as the “bait,” and then they isolated … Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science award. The DOE Joint BioEnergy …
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