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Digging into Microbial Ecosystems Deep Underground
… GI users and microbiome researchers Mike Wilkins and his graduate student Kaela Amundson at Colorado State University … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … have tapped into the resources and capabilities of both the JGI and the Environmental Molecular Science Laboratory …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … Faculty Investigator Jeremy Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were … Reports. Print copies will be available the annual JGI Genomics of Energy & Environment Meeting in San Francisco …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture …
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Picking Up Threads of Cotton Genomics
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  Plant Program , both faculty investigators at the HudsonAlpha … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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The Case for Conservation
… Advances article , a team led by McDaniel and his former graduate student Sarah Carey, now at the HudsonAlpha … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how lessons from …
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Integrating Experimentation with Data
… $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … The JGI and EMSL are U.S. Department of Energy (DOE) Office of … advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the DOE's Biological and Environmental Research (BER) program.   …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high …
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Cataloging the Microbes that Manage the Health of River Systems
… to the information. The team harnessed a community-science program to collect samples from across the country to … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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