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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and … These tools give researchers a way to access much more information about fungi in these environments. “Now with these … developed with the JGI, we have the tools to really get information on the functions of this fungal community, from …
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A zinc-finger-family transcription factor, AbVf19, is required for the induction of a gene subset important for virulence in Alternaria brassicicola.
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New Lineages of Life Group
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Metagenome Program
… genomics and metagenomics analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome … ( NMDC ) to enable the research community to perform large-scale multi-omics analyses on new and existing … GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing …
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Virus Discoveries that Keep Getting Bigger
… primarily from sampling an environment, then co-culturing isolated viruses in eukaryotic  microbial hosts. Lately, … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The … the marine algae  Emiliania huxleyi, a microeukaryote, forms large algal blooms in the ocean that cycle …
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Dispatches From JGI Interns
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… a novel technique to access high-quality genomic information using minute quantities of DNA derived from … a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from … genome of an uncultured symbiont. The single cell was isolated from the bacteriome of the green sharpshooter …
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Secondary Metabolites Program
… optimization of cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard …
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Methane Makers in Yosemite’s Lakes
… lakes of the Sierra Nevada mountains. These lakes are isolated, but varied. They’re a great way to see how climate …
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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DAS Tool for Genome Reconstruction from Metagenomes
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a subgenome. Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to …
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