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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … and evolution of  Dothideomycetes could provide more insights into how these fungi have adapted to stress and … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of …
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Introducing New Members of the JGI User Executive Committee
… User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … Additionally, she noted, “I would also like to offer my insights in promoting diversity, equity and inclusion (DEI) …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda … Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … around, disappearing and appearing in new places.” With new insights available, the power grid of gene regulation is …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants process nutrients has a rich …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein … plants while a Molecular Foundry researcher provided insights into how the regulatory mechanism evolved.  BNL …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … The work conducted by the US Department of Energy Joint Genome …
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