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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The … | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has … of the genus. Understanding all the gene variants and how they interact with each other could help tree breeders …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … physiologically and enzymatically, with descriptions of how their activities influence biochemical reactions. For … These specialized compounds enable organisms to respond to environmental stresses or mediate interactions …
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Len Pennacchio
… has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … regulation determines when and where genes are activated to sustain life’s processes.  Traditionally, mapping this … with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s availability to users is a …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are … Santa Barbara, he and his colleagues found that anaerobic fungi from herbivore poop might be a new source of novel … Symposium series. The online seminars foster discussion on how to best capture and characterize uncultivated viruses, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … that time. “Looking across the tree of life, it’s striking how many uncultivated lineages are only represented by … to utilize the catalog in his own research on how microbes respond to climate change. “With this dataset I can see …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “We’re very excited to start working … and bioproducts. Learn more about our proposals, including how to apply, here on our website. The approved proposals …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … the small molecules glycerol and itaconic acid to see how the cell-free system allowed them to increase the … in the absence of cell walls. If we can continue to learn how to focus the carbon flux, we can avoid transport …
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Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … the small molecules glycerol and itaconic acid to see how the cell-free system allowed them to increase the … in the absence of cell walls. If we can continue to learn how to focus the carbon flux, we can avoid transport …
Learn more
Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their … to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … of its photosynthetically fixed carbon to the mycobiont. However, despite a century-and-a-half of lichen research, …
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