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Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae
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Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
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DAP-seq Drives Robust Mapping of Gene Regulation
… As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — experimental … that flip genetic switches — bind DNA were limited to a few model species and involved slow, labor-intensive … challenges by using  in vitro -expressed TFs and fragmented genomic DNA, eliminating the need for living cells. This …
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Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094T), a moderately halophilic member of the Roseobacter clade
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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective … study,  published in  Metabolic Engineering , a team of researchers likewise honed their tool before felling their …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! … plant genomes. She has appeared on the annual Highly Cited Researchers list assembly by Clarivate Analytics. In 2020, …
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Crysten Blaby-Haas
… between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. … University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … and Cell Science, University of Florida NIH Postdoctoral Researcher, UCLA …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected … Tanja Woyke , JGI’s deputy of User Programs. “The proposed research by these PIs will address a broad diversity of … success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … the basis of their behavior in the environment. Large metagenomic surveys could lead to better predictive models of global climate. They may also provide a basic …
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