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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for … Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for … Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since … understand the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of …
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Extracting the Secrets of Secondary Metabolites
Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE allows for the transplanting of these BGCs from one organism into an alternate host via a landing pad … User Facility, is supported under contract DE-AC02- 05CH11231. …
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Mapping the microbiome milieu
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The emergence of microbiome centres
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Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community
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Draft Genomes of Two Strains of Flavobacterium Isolated from Lake Washington Sediment
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