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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … are symbionts, rather than free-living organisms as had been originally thought. The Impact The Antarctic lakes are … the Archaea isolated from Deep Lake, the coldest place on Earth known to support life, and previously sequenced by the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions due to more … in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and … and how these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … head.  Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure … at Oak Ridge National Laboratory. Dr. Fagnan has been the Distinguished Speaker at IBM Research in Almaden …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … played a key role in determining the composition of the Earth’s atmosphere and regulating the global climate for … , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and … DOE Office of Science National User Facilities in a single project. … FTICR-MS analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics … your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, … the resources for free. 8.  Q: What makes a successful project? A: Combination of: DOE mission relevance Science …
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JGI Announces 2026 Functional Genomics Recipients
… Pictured from left: [Above] Hanin Alzubaidy, Markus Covert, Sheel C. Dodani, Kathryn Fixen, … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI's biodesign and omics … to exploring how microbes metabolize and mobilize rare earth elements and other high-value resources. Enabled by …
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