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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … identified were found within the archaeal superphylum DPANN, named by a JGI-led team for the first five groups …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … on the past decade and shared favorite memories in a panel discussion.  Suzanne Sindi , a program cofounder and …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, … evolution of polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … accurately display eukaryotic and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … genetics that started with his education and carried forward into his roles as a senior research scientist at … Nigel Mouncey is the Secondary Metabolites Program head as well as our JGI Director. …
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