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Mapping the Earth’s Hidden Fungal Kingdom
… written in a yet-to-be-deciphered language. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … Knowledge Gap The fungal kingdom presents researchers with a sampling puzzle of extraordinary complexity. Beyond …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and his team then linked those species-level observations with data on microalgal communities across different ocean …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved understanding of multiple forest systems, …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per library. …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … results show that this singular library synthesized by JGI was versatile enough for use in multiple applications. …
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Accelerating Metagenomics Discoveries with Deep Learning
… Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … to become much simpler; instead of aligning sequences with popular, but computationally costly approaches such as …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Help from Citrus’ Bitter, Hardier Cousin
… Citrus , appeals in other ways. It better tolerates cold, withstands pests, and, especially tantalizing, resists a … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study …
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Charting Progress toward Professional Goals
… on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help … Students can apply for internships and work onsite with an experienced researcher who serves as their mentor. … experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at the JGI through three different …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze … data. (Data from the project are available on the  JGI Genome Portal .) The team has also been able to discover …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with the …
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