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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways they're working to make this technique, SIP, more standardized -- more reproducible, more reusable, and more insightful, for the future …
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Leo Baumgart
… pipelines to transition bench-scale methods into production workflows. He developed and scaled the multiDAP-seq … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at …
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2023 Progress Report
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: … where renewable, biological resources drive processes, products, and services.  Advancing the bioeconomy will provide a …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data …
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Biodesign
… chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic … DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference …
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Waiting to Respire
… years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a byproduct. The … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … sharing co-first authorship. Their data suggests that the shared common ancestor of all five bacterial lineages was an …
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular Foundry, a nanoscale research and … From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service …
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