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Nigel Mouncey
… and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI Director, Dr. … the JGI. This includes responsibilities toward the JGI internal scientific programs, the affiliated DOE National Laboratories, the …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… anniversary, published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the … a computational pipeline that scans specifically for RNA virus sequences, initially using it to comb through more …
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Understanding Wildfire Recovery, Starting in Soil
… , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have … a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … this spatial transcriptomics data captured molecular information from both plant cells and fungal cells. “Because …
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Frederik Schulz
… biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded … on agnostic pathogen detection and surveillance in complex samples. … Communications. 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). …
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Plant Microbial Interactions Group
… single-cell profiling methods, including single-cell RNA-seq, single-cell ATAC-seq, and spatial transcriptomics … 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to the public in a highly-cited 2006 publication in the journal Science . This provided a framework essential to … lab in Mulford Hall. There, they conducted DNA analyses of samples collected on recent SOD Blitz expeditions. The team … crisis implemented by the UC team was the development of a protocol for injecting a solution that bolsters the immune …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … in a controlled manner. These advancements allow controlled sample transport for mass spectrometry applications, for … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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An Integrated Dataset to Understand Ecosystem Interaction
… that contribute to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two environments: … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and …
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2023 Progress Report
… Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… by researchers at two U.S. Department of Energy national user facilities – the DOE Joint Genome Institute and the … Materials strategic initiative aims to enable the JGI user community to participate in the development and … strains that can synthesize other bio-based materials. For information about licensing the patented osteoyeast for …
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